IL_6C5L_230

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GUGGAUG*CUGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C5L_230 not in the Motif Atlas

Homologous match to IL_7RQB_001

Geometric discrepancy: 0.0928

The information below is about IL_7RQB_001

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_66414.6

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6C5L|1|DA|G|24
6C5L|1|DA|U|25
6C5L|1|DA|G|26
6C5L|1|DA|G|27
6C5L|1|DA|A|28
6C5L|1|DA|U|29
6C5L|1|DA|G|30
*
6C5L|1|DA|C|510
6C5L|1|DA|U|511
6C5L|1|DA|G|512
6C5L|1|DA|A|513
6C5L|1|DA|A|514
6C5L|1|DA|A|515
6C5L|1|DA|C|516

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D5

50S ribosomal protein L32

Chain DU

50S ribosomal protein L20

Chain DW

50S ribosomal protein L22