IL_6C5L_254
3D structure
- PDB id
- 6C5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- CGC*GGAG
- Length
- 7 nucleotides
- Bulged bases
- 6C5L|1|DA|G|932
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6C5L_254 not in the Motif Atlas
- Homologous match to IL_7RQB_025
- Geometric discrepancy: 0.3083
- The information below is about IL_7RQB_025
- Detailed Annotation
- Intercalated cWW
- Broad Annotation
- Intercalated cWW
- Motif group
- IL_52767.4
- Basepair signature
- cWW-L-R-cWW
- Number of instances in this motif group
- 28
Unit IDs
6C5L|1|DA|C|844
6C5L|1|DA|G|845
6C5L|1|DA|C|846
*
6C5L|1|DA|G|931
6C5L|1|DA|G|932
6C5L|1|DA|A|933
6C5L|1|DA|G|934
Current chains
- Chain DA
- 23S rRNA
Nearby chains
- Chain D3
- 50S ribosomal protein L30
Coloring options: