3D structure

PDB id
6C5L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CGC*GGAG
Length
7 nucleotides
Bulged bases
6C5L|1|DA|G|932
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6C5L_254 not in the Motif Atlas
Homologous match to IL_7RQB_025
Geometric discrepancy: 0.3083
The information below is about IL_7RQB_025
Detailed Annotation
Intercalated cWW
Broad Annotation
Intercalated cWW
Motif group
IL_52767.4
Basepair signature
cWW-L-R-cWW
Number of instances in this motif group
28

Unit IDs

6C5L|1|DA|C|844
6C5L|1|DA|G|845
6C5L|1|DA|C|846
*
6C5L|1|DA|G|931
6C5L|1|DA|G|932
6C5L|1|DA|A|933
6C5L|1|DA|G|934

Current chains

Chain DA
23S rRNA

Nearby chains

Chain D3
50S ribosomal protein L30

Coloring options:


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