IL_6C5L_271
3D structure
- PDB id
- 6C5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- GGUUG*CAUCC
- Length
- 10 nucleotides
- Bulged bases
- 6C5L|1|DA|U|1061
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6C5L_271 not in the Motif Atlas
- Homologous match to IL_5J7L_384
- Geometric discrepancy: 0.1749
- The information below is about IL_5J7L_384
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_33835.1
- Basepair signature
- cWW-L-R-L-R-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
6C5L|1|DA|G|1058
6C5L|1|DA|G|1059
6C5L|1|DA|U|1060
6C5L|1|DA|U|1061
6C5L|1|DA|G|1062
*
6C5L|1|DA|C|1076
6C5L|1|DA|A|1077
6C5L|1|DA|U|1078
6C5L|1|DA|C|1079
6C5L|1|DA|C|1080
Current chains
- Chain DA
- 23S rRNA
Nearby chains
- Chain DJ
- 50S ribosomal protein L10
- Chain DK
- 50S ribosomal protein L11
- Chain DQ
- 50S ribosomal protein L16
- Chain DZ
- 50S ribosomal protein L25
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