IL_6C5L_310

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUGCGUAGGAUAGGUG*CACCCUG

Length

23 nucleotides

Bulged bases

6C5L|1|DA|G|2112

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6C5L|1|DA|C|2108
6C5L|1|DA|U|2109
6C5L|1|DA|G|2110
6C5L|1|DA|C|2111
6C5L|1|DA|G|2112
6C5L|1|DA|U|2113
6C5L|1|DA|A|2114
6C5L|1|DA|G|2115
6C5L|1|DA|G|2116
6C5L|1|DA|A|2117
6C5L|1|DA|U|2118
6C5L|1|DA|A|2119
6C5L|1|DA|G|2120
6C5L|1|DA|G|2121
6C5L|1|DA|U|2122
6C5L|1|DA|G|2123
*
6C5L|1|DA|C|2175
6C5L|1|DA|A|2176
6C5L|1|DA|C|2177
6C5L|1|DA|C|2178
6C5L|1|DA|C|2179
6C5L|1|DA|U|2180
6C5L|1|DA|G|2181

Current chains

Chain DA

23S rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain CW

Transfer RNA; tRNA

Chain DC

50S ribosomal protein L1