IL_6C5L_313

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CAG*CGGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C5L_313 not in the Motif Atlas

Geometric match to IL_4WF9_086

Geometric discrepancy: 0.2961

The information below is about IL_4WF9_086

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_61476.2

Basepair signature

cWW-tSH-L-cWW-L

Number of instances in this motif group

7

Unit IDs

6C5L|1|DA|C|2297
6C5L|1|DA|A|2298
6C5L|1|DA|G|2299
*
6C5L|1|DA|C|2317
6C5L|1|DA|G|2318
6C5L|1|DA|G|2319
6C5L|1|DA|A|2320
6C5L|1|DA|G|2321

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DB

5S ribosomal RNA; 5S rRNA

Chain DG

50S ribosomal protein L5

Chain DS

50S ribosomal protein L18