IL_6C5L_314

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C5L_314 not in the Motif Atlas

Homologous match to IL_7RQB_089

Geometric discrepancy: 0.0975

The information below is about IL_7RQB_089

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.10

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

33

Unit IDs

6C5L|1|DA|C|2350
6C5L|1|DA|G|2351
6C5L|1|DA|A|2352
6C5L|1|DA|G|2353
*
6C5L|1|DA|C|2364
6C5L|1|DA|G|2365
6C5L|1|DA|A|2366
6C5L|1|DA|G|2367

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D0

50S ribosomal protein L27

Chain D6

50S ribosomal protein L33

Chain D8

50S ribosomal protein L35