IL_6C5L_319

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C5L_319 not in the Motif Atlas

Homologous match to IL_4WF9_092

Geometric discrepancy: 0.1097

The information below is about IL_4WF9_092

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_36931.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

23

Unit IDs

6C5L|1|DA|A|2459
6C5L|1|DA|U|2460
6C5L|1|DA|C|2461
*
6C5L|1|DA|G|2489
6C5L|1|DA|G|2490
6C5L|1|DA|U|2491
6C5L|1|DA|U|2492
6C5L|1|DA|U|2493

Current chains

Chain DA

23S rRNA

Nearby chains

Chain CY

Peptide chain release factor 2

Chain D0

50S ribosomal protein L27

Chain DQ

50S ribosomal protein L16