IL_6C5L_330

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CU*AUAAG

Length

7 nucleotides

Bulged bases

6C5L|1|DA|A|2713

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C5L_330 not in the Motif Atlas

Homologous match to IL_7RQB_106

Geometric discrepancy: 0.1013

The information below is about IL_7RQB_106

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71530.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

6C5L|1|DA|C|2695
6C5L|1|DA|U|2696
*
6C5L|1|DA|A|2711
6C5L|1|DA|U|2712
6C5L|1|DA|A|2712|||A
6C5L|1|DA|A|2713
6C5L|1|DA|G|2714

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DR

50S ribosomal protein L17

Chain DT

50S ribosomal protein L19