IL_6C5L_340
3D structure
- PDB id
- 6C5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- CGAUGGUAC*GGAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6C5L_340 not in the Motif Atlas
- Homologous match to IL_7RQB_115
- Geometric discrepancy: 0.1129
- The information below is about IL_7RQB_115
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.3
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
6C5L|1|DB|C|71
6C5L|1|DB|G|72
6C5L|1|DB|A|73
6C5L|1|DB|U|74
6C5L|1|DB|G|75
6C5L|1|DB|G|76
6C5L|1|DB|U|77
6C5L|1|DB|A|78
6C5L|1|DB|C|79
*
6C5L|1|DB|G|98
6C5L|1|DB|G|99
6C5L|1|DB|A|100
6C5L|1|DB|G|101
6C5L|1|DB|A|102
6C5L|1|DB|G|103
6C5L|1|DB|U|104
6C5L|1|DB|A|105
6C5L|1|DB|G|106
Current chains
- Chain DB
- 5S rRNA
Nearby chains
- Chain D0
- 50S ribosomal protein L27
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
- Chain DQ
- 50S ribosomal protein L16
- Chain DZ
- 50S ribosomal protein L25
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