IL_6C5L_341

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UGG*CUGA

Length

7 nucleotides

Bulged bases

6C5L|1|AA|G|388

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C5L_341 not in the Motif Atlas

Homologous match to IL_6CZR_128

Geometric discrepancy: 0.1965

The information below is about IL_6CZR_128

Detailed Annotation

Single bulged G, near cWW

Broad Annotation

Single bulged G, near cWW

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

6C5L|1|AA|U|375
6C5L|1|AA|G|376
6C5L|1|AA|G|377
*
6C5L|1|AA|C|386
6C5L|1|AA|U|387
6C5L|1|AA|G|388
6C5L|1|AA|A|389

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AP

30S ribosomal protein S16