IL_6C5L_346

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GCC*GC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C5L_346 not in the Motif Atlas

Geometric match to IL_5TBW_009

Geometric discrepancy: 0.1869

The information below is about IL_5TBW_009

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_05035.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

38

Unit IDs

6C5L|1|AA|G|929
6C5L|1|AA|C|930
6C5L|1|AA|C|931
*
6C5L|1|AA|G|1387
6C5L|1|AA|C|1388

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AE

30S ribosomal protein S5

Chain AG

30S ribosomal protein S7