IL_6C5L_351

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

ACUACAAAGCGAUG*CUAAUCGCAAAAAGGU

Length

30 nucleotides

Bulged bases

6C5L|1|AA|A|1256, 6C5L|1|AA|U|1257, 6C5L|1|AA|U|1278, 6C5L|1|AA|A|1280, 6C5L|1|AA|U|1281

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6C5L|1|AA|A|1245
6C5L|1|AA|C|1246
6C5L|1|AA|U|1247
6C5L|1|AA|A|1248
6C5L|1|AA|C|1249
6C5L|1|AA|A|1250
6C5L|1|AA|A|1251
6C5L|1|AA|A|1252
6C5L|1|AA|G|1253
6C5L|1|AA|C|1254
6C5L|1|AA|G|1255
6C5L|1|AA|A|1256
6C5L|1|AA|U|1257
6C5L|1|AA|G|1258
*
6C5L|1|AA|C|1277
6C5L|1|AA|U|1278
6C5L|1|AA|A|1279
6C5L|1|AA|A|1280
6C5L|1|AA|U|1281
6C5L|1|AA|C|1282
6C5L|1|AA|G|1283
6C5L|1|AA|C|1284
6C5L|1|AA|A|1285
6C5L|1|AA|A|1286
6C5L|1|AA|A|1287
6C5L|1|AA|A|1288
6C5L|1|AA|A|1289
6C5L|1|AA|G|1290
6C5L|1|AA|G|1291
6C5L|1|AA|U|1292

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AC

30S ribosomal protein S3

Chain AG

30S ribosomal protein S7

Chain AI

30S ribosomal protein S9

Chain AJ

30S ribosomal protein S10

Chain AM

30S ribosomal protein S13

Chain AN

30S ribosomal protein S14 type Z

Chain AU

30S ribosomal protein Thx