IL_6C5L_352

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CCAC*GGAG

Length

8 nucleotides

Bulged bases

6C5L|1|AA|C|1260

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C5L_352 not in the Motif Atlas

Homologous match to IL_4LFB_067

Geometric discrepancy: 0.2675

The information below is about IL_4LFB_067

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

6C5L|1|AA|C|1259
6C5L|1|AA|C|1260
6C5L|1|AA|A|1261
6C5L|1|AA|C|1262
*
6C5L|1|AA|G|1273
6C5L|1|AA|G|1274
6C5L|1|AA|A|1275
6C5L|1|AA|G|1276

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AU

30S ribosomal protein Thx