IL_6C5L_360

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GUG*CAACAAGC

Length

11 nucleotides

Bulged bases

6C5L|1|BA|C|1509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6C5L|1|BA|G|1480
6C5L|1|BA|U|1481
6C5L|1|BA|G|1482
*
6C5L|1|BA|C|1506
6C5L|1|BA|A|1507
6C5L|1|BA|A|1508
6C5L|1|BA|C|1509
6C5L|1|BA|A|1509|||A
6C5L|1|BA|A|1509|||B
6C5L|1|BA|G|1510
6C5L|1|BA|C|1511

Current chains

Chain BA

23S rRNA

Nearby chains