IL_6C5L_362

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUGUGAACCCCC*GGGGGGGAG

Length

21 nucleotides

Bulged bases

6C5L|1|BA|U|2132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6C5L|1|BA|C|2129
6C5L|1|BA|U|2130
6C5L|1|BA|G|2131
6C5L|1|BA|U|2132
6C5L|1|BA|G|2133
6C5L|1|BA|A|2134
6C5L|1|BA|A|2135
6C5L|1|BA|C|2136
6C5L|1|BA|C|2137
6C5L|1|BA|C|2138
6C5L|1|BA|C|2139
6C5L|1|BA|C|2140
*
6C5L|1|BA|G|2151
6C5L|1|BA|G|2152
6C5L|1|BA|G|2153
6C5L|1|BA|G|2154
6C5L|1|BA|G|2155
6C5L|1|BA|G|2156
6C5L|1|BA|G|2157
6C5L|1|BA|A|2158
6C5L|1|BA|G|2159

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BC

50S ribosomal protein L1