IL_6C5L_368

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UUAGUUG*CACUCUAA

Length

15 nucleotides

Bulged bases

6C5L|1|CA|U|1125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6C5L|1|CA|U|1121
6C5L|1|CA|U|1122
6C5L|1|CA|A|1123
6C5L|1|CA|G|1124
6C5L|1|CA|U|1125
6C5L|1|CA|U|1126
6C5L|1|CA|G|1127
*
6C5L|1|CA|C|1145
6C5L|1|CA|A|1146
6C5L|1|CA|C|1147
6C5L|1|CA|U|1148
6C5L|1|CA|C|1149
6C5L|1|CA|U|1150
6C5L|1|CA|A|1151
6C5L|1|CA|A|1152

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CI

30S ribosomal protein S9

Chain CJ

30S ribosomal protein S10