IL_6C5L_372

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GCCGCGAAGACAGCC*GGUCGAGUGGC

Length

26 nucleotides

Bulged bases

6C5L|1|DA|A|1046, 6C5L|1|DA|C|1049

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6C5L|1|DA|G|1039
6C5L|1|DA|C|1040
6C5L|1|DA|C|1041
6C5L|1|DA|G|1042
6C5L|1|DA|C|1043
6C5L|1|DA|G|1044
6C5L|1|DA|A|1045
6C5L|1|DA|A|1046
6C5L|1|DA|G|1047
6C5L|1|DA|A|1048
6C5L|1|DA|C|1049
6C5L|1|DA|A|1050
6C5L|1|DA|G|1051
6C5L|1|DA|C|1052
6C5L|1|DA|C|1053
*
6C5L|1|DA|G|1106
6C5L|1|DA|G|1107
6C5L|1|DA|U|1108
6C5L|1|DA|C|1109
6C5L|1|DA|G|1110
6C5L|1|DA|A|1111
6C5L|1|DA|G|1112
6C5L|1|DA|U|1113
6C5L|1|DA|G|1114
6C5L|1|DA|G|1115
6C5L|1|DA|C|1116

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D9

50S ribosomal protein L36

Chain DH

50S ribosomal protein L6

Chain DJ

50S ribosomal protein L10

Chain DQ

50S ribosomal protein L16

Chain DZ

50S ribosomal protein L25