IL_6CAE_238

3D structure

PDB id

6CAE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

UGCGAAC*GGAGGUAUA

Length

16 nucleotides

Bulged bases

6CAE|1|2A|G|1801, 6CAE|1|2A|G|1816, 6CAE|1|2A|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CAE_238 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.0375

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

6CAE|1|2A|U|1798
6CAE|1|2A|G|1799
6CAE|1|2A|C|1800
6CAE|1|2A|G|1801
6CAE|1|2A|A|1802
6CAE|1|2A|A|1803
6CAE|1|2A|C|1804
*
6CAE|1|2A|G|1813
6CAE|1|2A|G|1814
6CAE|1|2A|A|1815
6CAE|1|2A|G|1816
6CAE|1|2A|G|1817
6CAE|1|2A|U|1818
6CAE|1|2A|A|1819
6CAE|1|2A|U|1820
6CAE|1|2A|A|1821

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2a

Small subunit ribosomal RNA; SSU rRNA