IL_6CAO_018

3D structure

PDB id

6CAO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosomal decoding complex at ambient temperature

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GGACG*CGGUAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CAO_018 not in the Motif Atlas

Geometric match to IL_4LFB_018

Geometric discrepancy: 0.0798

The information below is about IL_4LFB_018

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6CAO|1|A|G|446
6CAO|1|A|G|447
6CAO|1|A|A|448
6CAO|1|A|C|449
6CAO|1|A|G|450
*
6CAO|1|A|C|483
6CAO|1|A|G|484
6CAO|1|A|G|485
6CAO|1|A|U|486
6CAO|1|A|A|487
6CAO|1|A|C|488

Current chains

Chain A

16S Ribosomal RNA rRNA

Nearby chains

Chain D

30S ribosomal protein S4

Chain P

30S ribosomal protein S16