IL_6CAO_048

3D structure

PDB id

6CAO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosomal decoding complex at ambient temperature

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CUGC*GAGGAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CAO_048 not in the Motif Atlas

Homologous match to IL_4LFB_050

Geometric discrepancy: 0.0758

The information below is about IL_4LFB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42032.1

Basepair signature

cWW-cSH-cWW-tWH-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

6CAO|1|A|C|1158
6CAO|1|A|U|1159
6CAO|1|A|G|1160
6CAO|1|A|C|1161
*
6CAO|1|A|G|1175
6CAO|1|A|A|1176
6CAO|1|A|G|1177
6CAO|1|A|G|1178
6CAO|1|A|A|1179
6CAO|1|A|A|1180
6CAO|1|A|G|1181

Current chains

Chain A

16S Ribosomal RNA rRNA

Nearby chains

Chain B

30S ribosomal protein S2

Chain I

30S ribosomal protein S9