3D structure

PDB id
6CAO (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the ribosomal decoding complex at ambient temperature
Experimental method
X-RAY DIFFRACTION
Resolution
3.45 Å

Loop

Sequence
CC*GAG
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6CAO_051 not in the Motif Atlas
Homologous match to IL_4LFB_053
Geometric discrepancy: 0.1422
The information below is about IL_4LFB_053
Detailed Annotation
Not an internal loop
Broad Annotation
Not an internal loop
Motif group
IL_58310.1
Basepair signature
cWW-tHS-cWW
Number of instances in this motif group
25

Unit IDs

6CAO|1|A|C|1259
6CAO|1|A|C|1260
*
6CAO|1|A|G|1274
6CAO|1|A|A|1275
6CAO|1|A|G|1276

Current chains

Chain A
16S Ribosomal RNA rRNA

Nearby chains

Chain U
30S ribosomal protein Thx

Coloring options:


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