IL_6CAO_063

3D structure

PDB id

6CAO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosomal decoding complex at ambient temperature

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

G(4OC)C(5MC)*G(UR3)AAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4OC, 5MC, UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CAO_063 not in the Motif Atlas

Homologous match to IL_4LFB_068

Geometric discrepancy: 0.0631

The information below is about IL_4LFB_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.4

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

4

Unit IDs

6CAO|1|A|G|1401
6CAO|1|A|4OC|1402
6CAO|1|A|C|1403
6CAO|1|A|5MC|1404
*
6CAO|1|A|G|1497
6CAO|1|A|UR3|1498
6CAO|1|A|A|1499
6CAO|1|A|A|1500
6CAO|1|A|C|1501

Current chains

Chain A

16S Ribosomal RNA rRNA

Nearby chains

Chain Y

RNA (5'-R(*UP*UP*UP*UP*UP*U)-3')