IL_6CAP_052

3D structure

PDB id

6CAP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus in complex with Sisomicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

C(5MC)G*CAAG

Length

7 nucleotides

Bulged bases

6CAP|1|A|A|1503

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CAP_052 not in the Motif Atlas

Homologous match to IL_4LFB_056

Geometric discrepancy: 0.0849

The information below is about IL_4LFB_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

6CAP|1|A|C|1399
6CAP|1|A|5MC|1400
6CAP|1|A|G|1401
*
6CAP|1|A|C|1501
6CAP|1|A|A|1502
6CAP|1|A|A|1503
6CAP|1|A|G|1504

Current chains

Chain A

16S Ribosomal RNA rRNA

Nearby chains

Chain Y

RNA (5'-R(*UP*UP*UP*UP*UP*U)-3')