IL_6CAP_056

3D structure

PDB id

6CAP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus in complex with Sisomicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGAG*UGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CAP_056 not in the Motif Atlas

Homologous match to IL_4LFB_060

Geometric discrepancy: 0.1662

The information below is about IL_4LFB_060

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

6CAP|1|A|G|1416
6CAP|1|A|G|1417
6CAP|1|A|A|1418
6CAP|1|A|G|1419
*
6CAP|1|A|U|1481
6CAP|1|A|G|1482
6CAP|1|A|A|1483
6CAP|1|A|C|1484

Current chains

Chain A

16S Ribosomal RNA rRNA

Nearby chains