3D structure

PDB id
6CAP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of 30S ribosomal subunit from Thermus thermophilus in complex with Sisomicin
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
GGAAU*GGAAC
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6CAP_063 not in the Motif Atlas
Homologous match to IL_4LFB_065
Geometric discrepancy: 0.0616
The information below is about IL_4LFB_065
Detailed Annotation
Triple non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_49751.4
Basepair signature
cWW-cWW-cWW-cWW-cWW
Number of instances in this motif group
16

Unit IDs

6CAP|1|A|G|673
6CAP|1|A|G|674
6CAP|1|A|A|675
6CAP|1|A|A|676
6CAP|1|A|U|677
*
6CAP|1|A|G|713
6CAP|1|A|G|714
6CAP|1|A|A|715
6CAP|1|A|A|716
6CAP|1|A|C|717

Current chains

Chain A
16S Ribosomal RNA rRNA

Nearby chains

Chain F
30S ribosomal protein S6
Chain K
30S ribosomal protein S11
Chain R
30S ribosomal protein S18

Coloring options:


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