IL_6CAP_069

3D structure

PDB id

6CAP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus in complex with Sisomicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

(5MC)AC*GAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CAP_069 not in the Motif Atlas

Homologous match to IL_4LFB_070

Geometric discrepancy: 0.2185

The information below is about IL_4LFB_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31531.3

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

13

Unit IDs

6CAP|1|A|5MC|1407
6CAP|1|A|A|1408
6CAP|1|A|C|1409
*
6CAP|1|A|G|1491
6CAP|1|A|A|1492
6CAP|1|A|A|1493
6CAP|1|A|G|1494

Current chains

Chain A

16S Ribosomal RNA rRNA

Nearby chains

Chain L

30S ribosomal protein S12

Chain W

RNA (5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3')

Chain Y

RNA (5'-R(*UP*UP*UP*UP*UP*U)-3')