IL_6CAQ_064

3D structure

PDB id

6CAQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

AGGG*CCU

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CAQ_064 not in the Motif Atlas

Geometric match to IL_4N0T_004

Geometric discrepancy: 0.3152

The information below is about IL_4N0T_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_99358.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

6CAQ|1|A|A|1001
6CAQ|1|A|G|1002
6CAQ|1|A|G|1003
6CAQ|1|A|G|1003|||A
*
6CAQ|1|A|C|1038
6CAQ|1|A|C|1039
6CAQ|1|A|U|1040

Current chains

Chain A

16S Ribosomal RNA rRNA

Nearby chains