IL_6CAR_047

3D structure

PDB id

6CAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Serial Femtosecond X-ray Crystal Structure of 30S ribosomal subunit from Thermus thermophilus in complex with Sisomicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GUUGC*GGCACUC

Length

12 nucleotides

Bulged bases

6CAR|1|A|U|1125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CAR_047 not in the Motif Atlas

Geometric match to IL_4LFB_048

Geometric discrepancy: 0.2493

The information below is about IL_4LFB_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85222.1

Basepair signature

cWW-L-R-L-R-L-cWW-L-L

Number of instances in this motif group

1

Unit IDs

6CAR|1|A|G|1124
6CAR|1|A|U|1125
6CAR|1|A|U|1126
6CAR|1|A|G|1127
6CAR|1|A|C|1128
*
6CAR|1|A|G|1143
6CAR|1|A|G|1144
6CAR|1|A|C|1145
6CAR|1|A|A|1146
6CAR|1|A|C|1147
6CAR|1|A|U|1148
6CAR|1|A|C|1149

Current chains

Chain A

16S Ribosomal RNA rRNA

Nearby chains

Chain I

30S ribosomal protein S9

Chain J

30S ribosomal protein S10