IL_6CAR_063

3D structure

PDB id

6CAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Serial Femtosecond X-ray Crystal Structure of 30S ribosomal subunit from Thermus thermophilus in complex with Sisomicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGAAU*GGAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CAR_063 not in the Motif Atlas

Homologous match to IL_4LFB_065

Geometric discrepancy: 0.0622

The information below is about IL_4LFB_065

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

6CAR|1|A|G|673
6CAR|1|A|G|674
6CAR|1|A|A|675
6CAR|1|A|A|676
6CAR|1|A|U|677
*
6CAR|1|A|G|713
6CAR|1|A|G|714
6CAR|1|A|A|715
6CAR|1|A|A|716
6CAR|1|A|C|717

Current chains

Chain A

16S Ribosomal RNA rRNA

Nearby chains

Chain F

30S ribosomal protein S6

Chain K

30S ribosomal protein S11

Chain R

30S ribosomal protein S18