IL_6CAS_036

3D structure

PDB id

6CAS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Serial Femtosecond X-ray Crystal Structure of 30S ribosomal subunit from Thermus thermophilus in complex with N1MS

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGG*UU

Length

5 nucleotides

Bulged bases

6CAS|1|A|G|926

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CAS_036 not in the Motif Atlas

Homologous match to IL_4LFB_036

Geometric discrepancy: 0.08

The information below is about IL_4LFB_036

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

69

Unit IDs

6CAS|1|A|G|925
6CAS|1|A|G|926
6CAS|1|A|G|927
*
6CAS|1|A|U|1390
6CAS|1|A|U|1391

Current chains

Chain A

16S Ribosomal RNA rRNA

Nearby chains