IL_6CAS_040

3D structure

PDB id

6CAS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Serial Femtosecond X-ray Crystal Structure of 30S ribosomal subunit from Thermus thermophilus in complex with N1MS

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

6CAS|1|A|U|1049

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CAS_040 not in the Motif Atlas

Homologous match to IL_4LFB_042

Geometric discrepancy: 0.0911

The information below is about IL_4LFB_042

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

6CAS|1|A|G|1048
6CAS|1|A|U|1049
6CAS|1|A|G|1050
*
6CAS|1|A|C|1208
6CAS|1|A|C|1209

Current chains

Chain A

16S Ribosomal RNA rRNA

Nearby chains

Chain N

30S ribosomal protein S14 type Z