IL_6CF2_002

3D structure

PDB id

6CF2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of HIV-1 Rev (residues 1-93)-RNA aptamer complex

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CG*CUGG

Length

6 nucleotides

Bulged bases

6CF2|1|G|G|24

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_66635.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

27

Unit IDs

6CF2|1|G|C|10
6CF2|1|G|G|11
*
6CF2|1|G|C|22
6CF2|1|G|U|23
6CF2|1|G|G|24
6CF2|1|G|G|25

Current chains

Chain G

RNA (35-MER)

Nearby chains

Chain F

Protein Rev