IL_6CFJ_024

3D structure

PDB id

6CFJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GCC*GAGU

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CFJ_024 not in the Motif Atlas

Geometric match to IL_4N0T_004

Geometric discrepancy: 0.3737

The information below is about IL_4N0T_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32983.2

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

6CFJ|1|1A|G|883
6CFJ|1|1A|C|884
6CFJ|1|1A|C|885
*
6CFJ|1|1A|G|985
6CFJ|1|1A|A|986
6CFJ|1|1A|G|987
6CFJ|1|1A|U|988

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 18

50S ribosomal protein L35

Chain 1P

50S ribosomal protein L15