IL_6CFJ_057

3D structure

PDB id

6CFJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

AGAAG*UGGU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CFJ_057 not in the Motif Atlas

Homologous match to IL_7RQB_060

Geometric discrepancy: 0.0947

The information below is about IL_7RQB_060

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_07235.1

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

6CFJ|1|1A|A|1516
6CFJ|1|1A|G|1517
6CFJ|1|1A|A|1518
6CFJ|1|1A|A|1519
6CFJ|1|1A|G|1520
*
6CFJ|1|1A|U|1566
6CFJ|1|1A|G|1567
6CFJ|1|1A|G|1568
6CFJ|1|1A|U|1569

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains