IL_6CFJ_166
3D structure
- PDB id
- 6CFJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- G(4OC)C(5MC)G*CG(UR3)AAC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 4OC, 5MC, UR3
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6CFJ_166 not in the Motif Atlas
- Homologous match to IL_4LFB_057
- Geometric discrepancy: 0.0631
- The information below is about IL_4LFB_057
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6CFJ|1|1a|G|1401
6CFJ|1|1a|4OC|1402
6CFJ|1|1a|C|1403
6CFJ|1|1a|5MC|1404
6CFJ|1|1a|G|1405
*
6CFJ|1|1a|C|1496
6CFJ|1|1a|G|1497
6CFJ|1|1a|UR3|1498
6CFJ|1|1a|A|1499
6CFJ|1|1a|A|1500
6CFJ|1|1a|C|1501
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 1v
- mRNA
- Chain 1x
- Transfer RNA; tRNA
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