IL_6CFJ_236

3D structure

PDB id

6CFJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UGCGAAC*GGAGGUAUA

Length

16 nucleotides

Bulged bases

6CFJ|1|2A|G|1801, 6CFJ|1|2A|G|1816, 6CFJ|1|2A|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CFJ_236 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.0408

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

6CFJ|1|2A|U|1798
6CFJ|1|2A|G|1799
6CFJ|1|2A|C|1800
6CFJ|1|2A|G|1801
6CFJ|1|2A|A|1802
6CFJ|1|2A|A|1803
6CFJ|1|2A|C|1804
*
6CFJ|1|2A|G|1813
6CFJ|1|2A|G|1814
6CFJ|1|2A|A|1815
6CFJ|1|2A|G|1816
6CFJ|1|2A|G|1817
6CFJ|1|2A|U|1818
6CFJ|1|2A|A|1819
6CFJ|1|2A|U|1820
6CFJ|1|2A|A|1821

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2a

Small subunit ribosomal RNA; SSU rRNA