IL_6CFJ_343
3D structure
- PDB id
- 6CFJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GGAACUCUG*CUGUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6CFJ_343 not in the Motif Atlas
- Homologous match to IL_9DFE_066
- Geometric discrepancy: 0.0535
- The information below is about IL_9DFE_066
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_22854.4
- Basepair signature
- cWW-tSH-cWW-tHW-R-L-cWW-L-L-R
- Number of instances in this motif group
- 7
Unit IDs
6CFJ|1|1A|G|1713
6CFJ|1|1A|G|1714
6CFJ|1|1A|A|1715
6CFJ|1|1A|A|1716
6CFJ|1|1A|C|1717
6CFJ|1|1A|U|1718
6CFJ|1|1A|C|1719
6CFJ|1|1A|U|1720
6CFJ|1|1A|G|1721
*
6CFJ|1|1A|C|2012
6CFJ|1|1A|U|2013
6CFJ|1|1A|G|2014
6CFJ|1|1A|U|2015
6CFJ|1|1A|C|2016
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1E
- 50S ribosomal protein L3
- Chain 1O
- 50S ribosomal protein L14
- Chain 1T
- 50S ribosomal protein L19
Coloring options: