IL_6CFK_001
3D structure
- PDB id
- 6CFK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- GUGGAUG*CUGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6CFK_001 not in the Motif Atlas
- Homologous match to IL_7RQB_001
- Geometric discrepancy: 0.0252
- The information below is about IL_7RQB_001
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_66414.6
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6CFK|1|1A|G|24
6CFK|1|1A|U|25
6CFK|1|1A|G|26
6CFK|1|1A|G|27
6CFK|1|1A|A|28
6CFK|1|1A|U|29
6CFK|1|1A|G|30
*
6CFK|1|1A|C|535
6CFK|1|1A|U|536
6CFK|1|1A|G|537
6CFK|1|1A|A|538
6CFK|1|1A|A|539
6CFK|1|1A|A|540
6CFK|1|1A|C|541
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 15
- 50S ribosomal protein L32
- Chain 1U
- 50S ribosomal protein L20
- Chain 1W
- 50S ribosomal protein L22
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