IL_6CFK_003
3D structure
- PDB id
- 6CFK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- GAG*CUCC
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6CFK_003 not in the Motif Atlas
- Geometric match to IL_4V9F_003
- Geometric discrepancy: 0.2466
- The information below is about IL_4V9F_003
- Detailed Annotation
- Major groove platform with extra cWW
- Broad Annotation
- Major groove platform
- Motif group
- IL_51387.2
- Basepair signature
- cWW-cSH-cWW-cWW
- Number of instances in this motif group
- 20
Unit IDs
6CFK|1|1A|G|42
6CFK|1|1A|A|43
6CFK|1|1A|G|44
*
6CFK|1|1A|C|460
6CFK|1|1A|U|461
6CFK|1|1A|C|462
6CFK|1|1A|C|463
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
No other chains within 10ÅColoring options: