IL_6CFK_022
3D structure
- PDB id
- 6CFK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- GGA*UAACC
- Length
- 8 nucleotides
- Bulged bases
- 6CFK|1|1A|G|823, 6CFK|1|1A|A|835, 6CFK|1|1A|A|836, 6CFK|1|1A|C|837
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6CFK_022 not in the Motif Atlas
- Geometric match to IL_7RQB_023
- Geometric discrepancy: 0.0439
- The information below is about IL_7RQB_023
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_90991.6
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6CFK|1|1A|G|822
6CFK|1|1A|G|823
6CFK|1|1A|A|824
*
6CFK|1|1A|U|834
6CFK|1|1A|A|835
6CFK|1|1A|A|836
6CFK|1|1A|C|837
6CFK|1|1A|C|838
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 17
- 50S ribosomal protein L34
- Chain 1D
- 50S ribosomal protein L2
- Chain 1F
- 50S ribosomal protein L4
- Chain 1W
- 50S ribosomal protein L22
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