3D structure

PDB id
6CFK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
GCACU*AAAC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6CFK_028 not in the Motif Atlas
Homologous match to IL_7RQB_029
Geometric discrepancy: 0.0379
The information below is about IL_7RQB_029
Detailed Annotation
C-loop with bulged stacked A's
Broad Annotation
C-loop
Motif group
IL_02509.1
Basepair signature
cWW-tSW-cWS-cSH-tWH-R-R-cWW
Number of instances in this motif group
5

Unit IDs

6CFK|1|1A|G|911
6CFK|1|1A|C|912
6CFK|1|1A|A|913
6CFK|1|1A|C|914
6CFK|1|1A|U|915
*
6CFK|1|1A|A|955
6CFK|1|1A|A|956
6CFK|1|1A|A|957
6CFK|1|1A|C|958

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 1B
5S ribosomal RNA; 5S rRNA
Chain 1Q
50S ribosomal protein L16
Chain 1Z
50S ribosomal protein L25

Coloring options:


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