3D structure

PDB id
6CFK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
GAC*GC
Length
5 nucleotides
Bulged bases
6CFK|1|1A|A|1265
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6CFK_047 not in the Motif Atlas
Homologous match to IL_7RQB_048
Geometric discrepancy: 0.0502
The information below is about IL_7RQB_048
Detailed Annotation
Single bulged A
Broad Annotation
No text annotation
Motif group
IL_37497.6
Basepair signature
cWW-L-cWW
Number of instances in this motif group
118

Unit IDs

6CFK|1|1A|G|1264
6CFK|1|1A|A|1265
6CFK|1|1A|C|1266
*
6CFK|1|1A|G|1275
6CFK|1|1A|C|1276

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 1U
50S ribosomal protein L20
Chain 1V
50S ribosomal protein L21

Coloring options:


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