IL_6CFK_069

3D structure

PDB id

6CFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

UGCGAAC*GGAGGUAUA

Length

16 nucleotides

Bulged bases

6CFK|1|1A|G|1832, 6CFK|1|1A|G|1847, 6CFK|1|1A|U|1851

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CFK_069 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.026

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

6CFK|1|1A|U|1829
6CFK|1|1A|G|1830
6CFK|1|1A|C|1831
6CFK|1|1A|G|1832
6CFK|1|1A|A|1833
6CFK|1|1A|A|1834
6CFK|1|1A|C|1835
*
6CFK|1|1A|G|1844
6CFK|1|1A|G|1845
6CFK|1|1A|A|1846
6CFK|1|1A|G|1847
6CFK|1|1A|G|1848
6CFK|1|1A|U|1849
6CFK|1|1A|A|1850
6CFK|1|1A|U|1851
6CFK|1|1A|A|1852

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1D

50S ribosomal protein L2

Chain 1a

Small subunit ribosomal RNA; SSU rRNA