IL_6CFK_093
3D structure
- PDB id
- 6CFK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- AUC*GGUUU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6CFK_093 not in the Motif Atlas
- Geometric match to IL_7RQB_094
- Geometric discrepancy: 0.0454
- The information below is about IL_7RQB_094
- Detailed Annotation
- Major groove minor groove platform with extra cWW
- Broad Annotation
- Major groove minor groove platform; mini C-loop
- Motif group
- IL_92788.2
- Basepair signature
- cWW-L-R-L-cWW-L
- Number of instances in this motif group
- 14
Unit IDs
6CFK|1|1A|A|2471
6CFK|1|1A|U|2472
6CFK|1|1A|C|2473
*
6CFK|1|1A|G|2501
6CFK|1|1A|G|2502
6CFK|1|1A|U|2503
6CFK|1|1A|U|2504
6CFK|1|1A|U|2505
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1Q
- 50S ribosomal protein L16
Coloring options: