IL_6CFK_169

3D structure

PDB id

6CFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

G(4OC)C(5MC)G*CG(UR3)AAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4OC, 5MC, UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CFK_169 not in the Motif Atlas

Homologous match to IL_4LFB_057

Geometric discrepancy: 0.0916

The information below is about IL_4LFB_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6CFK|1|1a|G|1401
6CFK|1|1a|4OC|1402
6CFK|1|1a|C|1403
6CFK|1|1a|5MC|1404
6CFK|1|1a|G|1405
*
6CFK|1|1a|C|1496
6CFK|1|1a|G|1497
6CFK|1|1a|UR3|1498
6CFK|1|1a|A|1499
6CFK|1|1a|A|1500
6CFK|1|1a|C|1501

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1A

Large subunit ribosomal RNA; LSU rRNA

Chain 1y

Ribosome-associated inhibitor A