IL_6CFK_250

3D structure

PDB id

6CFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

ACGA*UCUAU

Length

9 nucleotides

Bulged bases

6CFK|1|2A|C|2055, 6CFK|1|2A|C|2612, 6CFK|1|2A|U|2613

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CFK_250 not in the Motif Atlas

Homologous match to IL_9DFE_079

Geometric discrepancy: 0.0783

The information below is about IL_9DFE_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70335.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

6CFK|1|2A|A|2054
6CFK|1|2A|C|2055
6CFK|1|2A|G|2056
6CFK|1|2A|A|2057
*
6CFK|1|2A|U|2611
6CFK|1|2A|C|2612
6CFK|1|2A|U|2613
6CFK|1|2A|A|2614
6CFK|1|2A|U|2615

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 25

50S ribosomal protein L32

Chain 2E

50S ribosomal protein L3

Chain 2W

50S ribosomal protein L22