IL_6CFK_303

3D structure

PDB id

6CFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CFK_303 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1219

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

6CFK|1|2a|G|409
6CFK|1|2a|G|410
6CFK|1|2a|A|411
6CFK|1|2a|A|412
6CFK|1|2a|G|413
6CFK|1|2a|A|414
6CFK|1|2a|A|415
6CFK|1|2a|G|416
*
6CFK|1|2a|U|427
6CFK|1|2a|G|428
6CFK|1|2a|U|429
6CFK|1|2a|A|430
6CFK|1|2a|A|431
6CFK|1|2a|A|432
6CFK|1|2a|C|433

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2d

30S ribosomal protein S4