IL_6CFK_349

3D structure

PDB id

6CFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GGAACUCUG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CFK_349 not in the Motif Atlas

Homologous match to IL_9DFE_066

Geometric discrepancy: 0.0493

The information below is about IL_9DFE_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

6CFK|1|1A|G|1713
6CFK|1|1A|G|1714
6CFK|1|1A|A|1715
6CFK|1|1A|A|1716
6CFK|1|1A|C|1717
6CFK|1|1A|U|1718
6CFK|1|1A|C|1719
6CFK|1|1A|U|1720
6CFK|1|1A|G|1721
*
6CFK|1|1A|C|2012
6CFK|1|1A|U|2013
6CFK|1|1A|G|2014
6CFK|1|1A|U|2015
6CFK|1|1A|C|2016

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1E

50S ribosomal protein L3

Chain 1O

50S ribosomal protein L14