IL_6CFK_364

3D structure

PDB id

6CFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CGG*CCCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CFK_364 not in the Motif Atlas

Geometric match to IL_5TBW_056

Geometric discrepancy: 0.3582

The information below is about IL_5TBW_056

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

6CFK|1|2a|C|656
6CFK|1|2a|G|657
6CFK|1|2a|G|658
*
6CFK|1|2a|C|747
6CFK|1|2a|C|748
6CFK|1|2a|C|749
6CFK|1|2a|G|750

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2o

30S ribosomal protein S15