3D structure

PDB id
6CFL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with lysyl-CAM and bound to protein Y (YfiA) at 2.6A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.6 Å

Loop

Sequence
CGC*GGAG
Length
7 nucleotides
Bulged bases
6CFL|1|1A|G|977
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6CFL_024 not in the Motif Atlas
Homologous match to IL_7RQB_025
Geometric discrepancy: 0.0458
The information below is about IL_7RQB_025
Detailed Annotation
Intercalated cWW
Broad Annotation
Intercalated cWW
Motif group
IL_52767.4
Basepair signature
cWW-L-R-cWW
Number of instances in this motif group
28

Unit IDs

6CFL|1|1A|C|891
6CFL|1|1A|G|892
6CFL|1|1A|C|893
*
6CFL|1|1A|G|976
6CFL|1|1A|G|977
6CFL|1|1A|A|978
6CFL|1|1A|G|979

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 13
50S ribosomal protein L30

Coloring options:


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